Step 5 - Install the required Cytoscape applications. Step 4 - Download the latest version of Cytoscape from. We recommend the javaGSEA desktop application available at. Step 3 - Download the latest version of GSEA. Solution: The Java website ( ) has a help page called ‘How to find Java version in Windows or Mac – Manual method’ ( ) to find which version of Java is already installed Problem: User does not know whether Java is installed on the computer or which version is installed (14 - 20) Exporting figures, creating legends and saving work.(13F) Creation of a subnetwork that highlights a specific theme subset.(13E) Manual arrangement of network nodes and updating of theme labels.(13D) Creation of a simplified network view.(13B) Organization and clarification of the network.Show connections between genes in Gene set using STRING.Show pathway connections between genes in Gene set using Pathway commons.Show connections between genes in Gene set using GeneMANIA.(13A) Exploring the Table Panel heat map.(10-12) Navigation and interpretation of the enrichment map.(9B) GSEA - Creation of enrichment maps for results generated in Step 6B. Specification of additional optional files:.(9A) g:Profiler - Creation of enrichment maps for results generated in Step 6A.(7-9) Visualization of enrichment results with EnrichmentMap.Loading the required data files into GSEA.
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